

References
ABS (Australian Bureau of Statistics) (2016) Tourism Satellite Account 2014-15, cat. no. 5249.0, ABS, Canberra.
Aharon-Rotman Y, Bauer S & Klaassen M (2016). A chain is as strong as its weakest link: assessing the consequences of habitat loss and degradation in a long-distance migratory shorebird. Emu 116(2):199–207.
Airoldi L, Turon X, Perkol-Finkel S & Rius M (2015). Corridors for aliens but not for natives: effects of marine urban sprawl at a regional scale. Diversity and Distributions 21(7):755–768.
Alexander LV, Zhang X, Peterson TC, Caesar J, Gleason B, Klein Tank AMG, Haylock M, Collins D, Trewin B, Rahimzadeh F, A Tagipour, Rupa Kumar K, Revadekar J, Griffiths G, Vincent L, Stephenson DB, Burn J, Aguilar E, Brunet M, Taylor M, New M, Zhai P, Rusticucci M & Vazquez-Aguirre JL (2006). Global observed changes in daily climate extremes of temperature and precipitation. Journal of Geophysical Research: Atmospheres 111(D5):D05109, doi:10.1029/2005JD006290.
Allen S, Marsh H & Hodgson A (2004). Occurrence and conservation of the dugong (Sirenia: Dugongidae) in New South Wales. Proceedings of the Linnean Society of New South Wales 125:211–216.
Alleway HK & Connell SD (2015). Loss of an ecological baseline through the eradication of oyster reefs from coastal ecosystems and human memory. Conservation Biology 29(3):795–804.
Allinson G, Bui A, Zhang P, Rose G, Wightwick AM, Allinson M & Pettigrove V (2014). Investigation of 10 herbicides in surface waters of a horticultural production catchment in southeastern Australia. Archives of Environmental Contamination and Toxicology 67(3):358–373.
Alongi DM (2015). The impact of climate change on mangrove forests. Current Climate Change Reports 1:30–39.
Álvarez-Romero JG, Devlin M, Teixeira da Silva E, Petus C, Ban NC, Pressey RL, Kool J, Roberts JJ, Cerdeira-Estrada S, Wenger AS & Brodie J (2013). A novel approach to model exposure of coastal-marine ecosystems to riverine flood plumes based on remote-sensing techniques. Journal of Environmental Management 119:194-207.
Amelung B & Nicholls S (2014). Implications of climate change for tourism in Australia. Tourism Management 41:228–244.
Anthony KRN, Dambacher JM, Walsh T & Beeden R (2013). A framework for understanding cumulative impacts, supporting environmental decisions and informing resilience based management of the Great Barrier Reef World Heritage Area, final report to the Great Barrier Reef Marine Park Authority and Department of the Environment, Great Barrier Reef Marine Park Authority, Townsville.
APPEA (Australian Petroleum Production & Exploration Association) (2016). LNG in Australia: national and global benefits, APPEA, Canberra.
Asbridge E, Lucas R, Ticehurst C & Bunting P (2016). Mangrove response to environmental change in Australia’s Gulf of Carpentaria. Ecology and Evolution 6(11):3523–3539.
Australian Government (2015). Our north, our future: white paper on developing northern Australia, Australian Government, Canberra.
Banks PB & Hughes N (2012). A review of the evidence for potential impacts of black rats (Rattus rattus) on wildlife and humans in Australia. Wildlife Research 39(1):78–88.
Banks PB & Smith HM (2015). The ecological impacts of commensal species: black rats, Rattus rattus, at the urban–bushland interface. Wildlife Research 42(2):86–97.
Barber M (2010). Coastal conflicts and reciprocal relations: encounters between Yolngu people and commercial fishermen in Blue Mud Bay, north-east Arnhem Land. Australian Journal of Anthropology 21(3):298–314.
Bascompte J, Melián CJ & Sala E (2005). Interaction strength combinations and the overfishing of a marine food web.Proceedings of the National Academy of Sciences of the United States of America 102(15):5443–5447.
Basford AJ, Feary DA, Truong G, Steinberg PD, Marzinelli EM & Vergés A (2016). Feeding habits of range-shifting herbivores: tropical surgeonfishes in a temperate environment. Marine and Freshwater Research 67(1):75–83.
Baulch S & Perry C (2014). Evaluating the impacts of marine debris on cetaceans. Marine Pollution Bulletin 80(1–2):210–221.
Bayliss P, Woodward E & Lawson T (2015). Integrating Indigenous knowledge and survey techniques to develop a baseline for dugong (Dugong dugon) management in the Kimberley, milestone report 2/2 of project 1.2.5, Kimberley Marine Research Program node of the Western Australian Marine Science Institution, Perth.
Beeton RJS, Buxton CD, Cutbush GC, Fairweather PG, Johnston EL & Ryan R (2012). Report of the Independent Scientific Audit of Marine Parks in New South Wales, NSW Department of Primary Industries & NSW Office of Environment and Heritage, Sydney.
Bell J & Morrison T (2015). A comparative analysis of the transformation of governance systems: land-use planning for flood risk. Journal of Environmental Policy & Planning 17:516–534.
Bell J, Saunders MI, Leon JX, Mills M, Kythreotis A, Phinn S, Mumby PJ, Lovelock CE, Hoegh-Guldberg O & Morrison TH (2014). Maps, laws and planning policy: working with biophysical and spatial uncertainty in the case of sea level rise. Environmental Science & Policy 44:247–257.
Bellard C, Bertelsmeier C, Leadley P, Thuiller W & Courchamp F (2012). Impacts of climate change on the future of biodiversity. Ecology Letters 15(4):365–377.
Birch GF & Rochford L (2010). Stormwater metal loading to a well-mixed/stratified estuary (Sydney estuary, Australia) and management implications. Environmental Monitoring and Assessment 169(1):531–551.
Birch GF, Chang C-H, Lee J-H & Churchill LJ (2013). The use of vintage surficial sediment data and sedimentary cores to determine past and future trends in estuarine metal contamination (Sydney estuary, Australia). Science of the Total Environment 454:542–561.
Birch GF, Scammell MS & Besley CH (2014). The recovery of oyster (Saccostrea glomerata) populations in Sydney estuary (Australia). Environmental Science and Pollution Research 21(1):766–773.
Birch GF, Scammell MS & Besley CH (2014). The recovery of oyster (Saccostrea glomerata) populations in Sydney estuary (Australia). Environmental Science and Pollution Research, 21(1):766-773.
Birch GF, Gunns TJ & Olmos M (2015a). Sediment-bound metals as indicators of anthropogenic change in estuarine environments. Marine Pollution Bulletin 101(1):243–257.
Birch GF, Drage DS, Thompson K, Eaglesham G & Mueller JF (2015b). Emerging contaminants (pharmaceuticals, personal care products, a food additive and pesticides) in waters of Sydney estuary, Australia. Marine Pollution Bulletin 97(1–2):56–66.
Bishop M, Mayer-Pinto M, Airoldi L, Firth L, Morris R, Loke L, Hawkins S, Naylor L, Coleman R, Chee S & Dafforn K (in press). Effects of ocean sprawl on ecological connectivity: impacts and solutions. Journal of Experimental Marine Biology and Ecology.
Blandon A & zu Ermgassen PSE (2014). Quantitative estimate of commercial fish enhancement by seagrass habitat in southern Australia. Estuarine, Coastal and Shelf Science 141:1–8.
Bodelier PLE (2011). Toward understanding, managing, and protecting microbial ecosystems. Frontiers in Microbiology 2:article 80, doi:10.3389/fmicb.2011.00080.
Bohnsack JA (1989). Are high densities of fishes at artificial reefs the result of habitat limitation or behavioral preference? Bulletin of Marine Science 44(2):631–645.
Bolton D, Mayer-Pinto M, Clark GF, Dafforn KA, Brassil WA, Becker A & Johnston EL (2017). Coastal urban lighting has ecological consequences for multiple trophic levels under the sea. Science of the Total Environment 576:1–9.
Boon PI (2012). Coastal wetlands of temperate eastern Australia: will Cinderella ever go to the ball? Marine and Freshwater Research 63(10):845?855.
Boon, P. and Hurst, T. 2016. Agricultural weeds and coastal saltmarsh in south-eastern Australia: an insurmountable problem?. Australian Journal of Botany, 64, 308-324.
Boon PI, Allan T, Brook J, Carr G, Frood D, Harty C, Hoye J, McMahon A, Mathews S, Rosengren N, Sinclair S, White M & Yugovic J (2011). Mangroves and coastal saltmarsh of Victoria: distribution, condition, threats and management, Victorian Saltmarsh Study, Institute for Sustainability and Innovation, Victoria University, Melbourne.
Borja A, Elliott M, Andersen JH, Berg T, Carstensen J, Halpern BS, Heiskanen A, Korpinen S, Lowndes JS, Martin G & Rodriguez-Ezpeleta N (2016). Overview of integrative assessment of marine systems: the ecosystem approach in practice. Frontiers in Marine Science 3:article 20, doi:10.3389/fmars.2016.00020.
Bradshaw CJA (2012). Little left to lose: deforestation and forest degradation in Australia since European colonization. Journal of Plant Ecology 5(1):109–120.
Brearley A (2005). Ernest Hodgkin’s swanland: estuaries and coastal lagoons of south-western Australia, UWA Publishing, Perth.
Breitburg DL, Hondorp DW, Davias LA & Diaz RJ (2009). Hypoxia, nitrogen, and fisheries: integrating effects across local and global landscapes. Marine Science 1:329–349.
Brodie J, Waterhouse J, Schaffelke B, Furnas M, Maynard J, Collier C, Lewis S, Warne M, Fabricius K, Devlin M, McKenzie L, Yorkston H, Randall L, Bennett J & Brando V (2013). Relative risks to the Great Barrier Reef from degraded water quality. In: 2013 scientific consensus statement: land use impacts on Great Barrier Reef water quality and ecosystem condition, Reef Water Quality Protection Plan Secretariat, Brisbane, accessed November 2016.
Brown CJ, Saunders MI, Possingham HP & Richardson AJ (2014). Interactions between global and local stressors of ecosystems determine management effectiveness in cumulative impact mapping. Diversity and Distributions 20(5):538–546.
Browne MA (2015). Sources and pathways of microplastic to habitats. In: Bergmann M, Gutow L & Klages M (eds), Marine anthropogenic litter, Springer International Publishing, Switzerland, 229–244.
Browne MA & Chapman MG (2011). Ecologically informed engineering reduces loss of intertidal biodiversity on artificial shorelines. Environmental Science and Technology 45(19):8204–8207.
Browne MA, Dissanayake A, Galloway TS, Lowe DM & Thompson RC (2008). Ingested microscopic plastic translocates to the circulatory system of the mussel, Mytilus edulis (L.). Environmental Science & Technology 42(13):5026–5031.
Browne MA, Crump P, Niven SJ, Teuten E, Tonkin A, Galloway T & Thompson R (2011). Accumulation of microplastic on shorelines woldwide: sources and sinks. Environmental Science & Technology 45(21):9175–9179.
Browne MA, Niven SJ, Galloway TS, Rowland SJ & Thompson RC (2013). Microplastic moves pollutants and additives to worms, reducing functions linked to health and biodiversity. Current Biology 23(23):2388–2392.
Browne MA, Chapman MG, Thompson RC, Amaral-Zettler LA, Jambeck J & Mallos NJ (2015). Spatial and temporal patterns of stranded intertidal marine debris: is there a picture of global change? Environmental Science & Technology 49(12):7082–7094.
Bruun P (1962). Sea-level rise as a cause of shore erosion. Journal of the Waterways and Harbors Division 88(1):117–130.
Bureau of Meteorology & CSIRO, 2014, State of the climate 2014.
Bureau of Meteorology, 2011, Annual climate summary 2011, Australian Government.
Bureau of Meteorology, 2015, Annual climate summary 2015, Australia Government.
Burton GA & Johnston EL (2010). Assessing contaminated sediments in the context of multiple stressors. Environmental Toxicology and Chemistry 29(12):2625–2643.
Cadotte MW, Carscadden K & Mirotchnick N (2011). Beyond species: functional diversity and the maintenance of ecological processes and services. Journal of Applied Ecology 48(5):1079–1087.
Campbell D & Murphy JJ (2005). The 2000–01 National Recreational Fishing Survey: economic report, Australian Government Department of Agriculture, Fisheries and Forestry, Canberra.
Canesi L & Corsi I (2016). Effects of nanomaterials on marine invertebrates. Science of the Total Environment 565:933–940.
Carter AC, Jarvis JC, Bryant CV & Rasheed MA (2015). Development of seagrass indicators for the Gladstone Healthy Harbour Partnership Report Card, ISP011: seagrass, research publication 15/29, Centre for Tropical Water & Aquatic Ecosystem, James Cook University, Cairns.
Case RJ, Longford SR, Campbell AH, Low A, Tujula N, Steinberg PD & Kjelleberg S (2011). Temperature induced bacterial virulence and bleaching disease in a chemically defended marine macroalga. Environmental Microbiology 13(2):529–537.
Ceccarelli DM (2009). Impacts of plastic debris on Australian marine wildlife, report by C&R Consulting for the Australian Government Department of the Environment, Water, Heritage and the Arts, Canberra.
Cetina-Heredia P, Roughan M, Sebille E, Feng M & Coleman MA (2015). Strengthened currents override the effect of warming on lobster larval dispersal and survival. Global Change Biology 21(12):4377–4386.
Champion C, Suthers IM & Smith JA (2015). Zooplanktivory is a key process for fish production on a coastal artificial reef.Marine Ecology Progress Series 541:1–14.
Chapman MG (2003). Paucity of mobile species on constructed seawalls: effects of urbanization on biodiversity. Marine Ecology Progress Series 264:1–29.
Chapman MG & Bulleri F (2003). Intertidal seawalls—new features of landscape in intertidal environments. Landscape and Urban Planning 62(3):159–172.
Chapman G, Gray J, Murphy B, Atkinson G, Leys J, Muller R, Peasley B, Wilson B, Bowman G, McInnes-Clarke S, Tulau M, Morand D & Yang X (2011). Assessing the condition of soils in NSW, Monitoring, Evaluation and Reporting Program, Technical Report Series, NSW Office of Environment and Heritage, Sydney.
Chiew FHS, Potter NJ, Vaze J, Petheram C, Zhang L, Teng J & Post DA (2014). Observed hydrologic non-stationarity in far south-eastern Australia: implications and future modelling predictions. Stochastic Environmental Research and Risk Assessment 28(1):3–15.
Chislock MF, Doster E, Zitomer RA & Wilson AE (2013). Eutrophication: causes, consequences, and controls in aquatic ecosystems. Nature Education Knowledge 4(4):10.
Church JA, Hunter JR, McInnes KL & White NJ (2006). Sea-level rise around the Australian coastline and the changing frequency of extreme sea-level events. Australian Meteorological Magazine 55:253–260.
Church JA, Clark PU, Cazenave A, Gregory JM, Jevrejeva S, Levermann A, Merrifield MA, Milne GA, Nerem RS, Nunn PD, Payne AJ, Pfeffer WT, Stammer D & Unnikrishnan AS (2013a). Sea level change. In: Stocker TF, Qin D, Plattner G-K, Tignor MMB, Allen SK, Boschung J, Nauels A, Xia Y, Bex V & Midgley PM (eds), Climate change 2013: the physical science basis, contribution of Working Group I to the Fifth Assessment Report of the Intergovernmental Panel on Climate Change, Cambridge University Press, Cambridge, United Kingdom, & New York, United States, 1137–1216.
Church JA, Monselesan D, Gregory JM & Marzeion B (2013b). Evaluating the ability of process based models to project sea-level change. Environmental Research Letters 8:014051, doi:10.1088/1748-9326/8/1/014051.
Claisse JT, Pondella DJ, Love M, Zahn LA, Williams CM, Williams JP & Bull AS (2014). Oil platforms off California are among the most productive marine fish habitats globally. Proceedings of the National Academy of Sciences of the United States of America 111(43):15462–15467.
Clark G & Johnston E (2014). Sydney Desalination Plant MEMP: recruitment and salinity studies, final report, University of New South Wales, Sydney.
Clark GF, Kelaher BP, Dafforn KA, Coleman MA, Knott NA, Marzinelli EM & Johnston EL 2015. What does impacted look like? High diversity and abundance of epibiota in modified estuaries. Environmental Pollution, 196, 12-20.
Clarke H, Lucas C & Smith P (2013). Changes in Australian fire weather between 1973 and 2010. International Journal of Climatology 33(4):931–944.
Clemens RS, Rogers DI, Hansen BD, Gosbell K, Minton CD, Straw P, Bamford M, Woehler EJ, Milton DA & Weston MA (2016). Continental-scale decreases in shorebird populations in Australia. Emu.
Coelho FJRC, Santos AL, Coimbra J, Almeida A, Cunha Â, Cleary DFR, Calado R & Gomes NCM (2013). Interactive effects of global climate change and pollution on marine microbes: the way ahead. Ecology and Evolution 3(6):1808–1818.
Coleman MA, Kelaher BP, Steinberg PD & Millar AJK (2008). Absence of a large brown macroalga on urbanized rocky reefs around Sydney, Australia, and evidence for historical decline. Journal of Phycology 44(4):897–901.
Collins M, An S, Cai W, Ganachaud A, Guilyardi E, Jin F, Jochum M, Lengaigne M, Power S & Timmermann A (2010). The impact of global warming on the tropical Pacific Ocean and El Niño. Nature Geoscience 3:391–397.
Condie SA, Waring J, Mansbridge JV & Cahill ML (2005). Marine connectivity patterns around the Australian continent. Environmental Modelling & Software 20(9):1149–1157.
Congdon B (2008). Seabirds. In: Hutchings PA, Kingsford MJ & Hoegh-Guldberg O (eds), The Great Barrier Reef: biology, environment and management, CSIRO Publishing, Collingwood, Melbourne, 359–368.
Connell SD, Russell BD, Turner DJ, Shepherd SA, Kildea T, Miller D, Airoldi L & Cheshire A (2008). Recovering a lost baseline: missing kelp forests from a metropolitan coast. Marine Ecology Progress Series 360:63–72.
Connell SD, Kroeker KJ, Fabricius KE, Kline DI & Russell BD (2013). The other ocean acidification problem: CO2 as a resource among competitors for ecosystem dominance. Philosophical Transactions of the Royal Society B: Biological Sciences 368(1627):20120442, doi:10.1098/rstb.2012.0442.
Cook SB, Sundaram B, Carey H & Werner AD (eds) (2014). Proceedings of National Coastal Groundwater Management Knowledge Transfer Workshop, Canberra, 28–29 May 2013, Geoscience Australia, Canberra.
Cooke BC, Jones AR, Goodwin ID & Bishop MJ (2012). Nourishment practices on Australian sandy beaches: a review. Journal of Environmental Management 113:319–327.
Cousens R, Kennedy D, Maguire G & Williams K (2013). Just how bad are coastal weeds? Assessing the geo-eco-psycho-socio-economic impacts, report to the Rural Industries Research and Development Corporation, University of Melbourne, Melbourne.
Cowell PJ, Stive MJF, Niedoroda AW, de Vriend HJ, Swift DJP, Kaminsky GM & Capobianco M (2003). The coastal-tract (part 1): a conceptual approach to aggregated modeling of low-order coastal change. Journal of Coastal Research 19(4):812–827.
Creighton C, Boon PI, Brookes JD & Sheaves M (2015). Repairing Australia’s estuaries for improved fisheries production–what benefits, at what cost? Marine and Freshwater Research 66(6):493–507.
Critchell K, Grech A, Schlaefer J, Andutta FP, Lambrechts J, Wolanski E & Hamann M (2015). Modelling the fate of marine debris along a complex shoreline: lessons from the Great Barrier Reef. Estuarine, Coastal and Shelf Science 167:414–426.
CSIRO (Commonwealth Scientific and Industrial Research Organisation) (2008). Water availability in the Murray–Darling Basin, a report to the Australian Government from the CSIRO Murray–Darling Basin Sustainable Yields Project, CSIRO, Australia.
CSIRO (Commonwealth Scientific and Industrial Research Organisation) (2011). Water: science and solutions for Australia, CSIRO Publishing, Melbourne.
Cuddington K, Fortin M-J, Gerber LR, Hastings A, Liebhold A, O’Connor M & Ray C (2013). Process-based models are required to manage ecological systems in a changing world. Ecosphere 4(2):article 20.
Dafforn KA, Simpson SL, Kelaher BP, Clark GF, Komyakova V, Wong CK & Johnston EL (2012). The challenge of choosing environmental indicators of anthropogenic impacts in estuaries. Environmental Pollution 163:207–217.
Dafforn KA, Kelaher BP, Simpson SL, Coleman MA, Hutchings PA, Clark GF, Knott NA, Doblin MA & Johnston EL (2013). Polychaete richness and abundance enhanced in anthropogenically modified estuaries despite high concentrations of toxic contaminants. PloS ONE 8:e77018, doi:10.1371/journal.pone.0077018.
Dafforn KA, Glasby TM, Airoldi L, Rivero NK, Mayer-Pinto M & Johnston EL (2015). Marine urbanization: an ecological framework for designing multifunctional artificial structures. Frontiers in Ecology and the Environment 13(2):82–90.
Dale PER & Hulsman K (1990). A critical review of salt marsh management methods for mosquito control. Critical Reviews in Aquatic Science 3(2–3):281–311.
Davidson TM (2012). Boring crustaceans damage polystyrene floats under docks polluting marine waters with microplastic. Marine Pollution Bulletin 64(9):1821–1828.
Davie P (2012). Infraorder Brachyura Latreille, 1802. In: Australian faunal directory, Australian Government Department of the Environment, Canberra, accessed 31 March 2016.
Davies CH, Coughlan A, Hallegraeff G, Ajani P, Armbrecht L, Atkins N, Bonham P, Brett S, Brinkman R, Burford M, Clementson L, Coad P, Coman F, Davies D, Dela-Cruz J, Devlin M, Edgar S, Eriksen R, Furnas M, Hassler C, Hill D, Holmes M, Ingleton T, Jameson I, Leterme SC, Lønborg C, McLaughlin J, McEnnulty F, McKinnon AD, Miller M, Murray S, Nayar S, Patten R, Pritchard T, Proctor R, Purcell-Meyerink D, Raes E, Rissik D, Ruszczyk J, Slotwinski A, Swadling KM, Tattersall K, Thompson P, Thomson P, Tonks M, Trull TW, Uribe-Palomino J, Waite AM, Yauwenas R, Zammit A & Richardson AJ (2016). A database of marine phytoplankton abundance, biomass and species composition in Australian waters. Scientific Data 3:article 160043, doi:10.1038/sdata.2016.43.